SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hgrb2 (5hgr B:176-317)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2161468Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2161993Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2162741Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2162742Protein automated matches [190205] (26 species)
    not a true protein
  7. 2282933Species Nostoc sp. [TaxId:103690] [326234] (1 PDB entry)
  8. 2282947Domain d5hgrb2: 5hgr B:176-317 [326248]
    Other proteins in same PDB: d5hgra1, d5hgrb1
    automated match to d1m98a2
    complexed with 45d

Details for d5hgrb2

PDB Entry: 5hgr (more details), 1.68 Å

PDB Description: structure of anabaena (nostoc) sp. pcc 7120 orange carotenoid protein binding canthaxanthin
PDB Compounds: (B:) Orange Carotenoid Protein (OCP)

SCOPe Domain Sequences for d5hgrb2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5hgrb2 d.17.4.0 (B:176-317) automated matches {Nostoc sp. [TaxId: 103690]}

SCOPe Domain Coordinates for d5hgrb2:

Click to download the PDB-style file with coordinates for d5hgrb2.
(The format of our PDB-style files is described here.)

Timeline for d5hgrb2:

  • d5hgrb2 appears in periodic updates to SCOPe 2.06 starting on 2016-11-17

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