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Lineage for d5l6aq_ (5l6a Q:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2201124Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2201125Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2205325Family d.153.1.0: automated matches [191393] (1 protein)
    not a true family
  6. 2205326Protein automated matches [190509] (13 species)
    not a true protein
  7. 2205369Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256123] (91 PDB entries)
  8. 2282696Domain d5l6aq_: 5l6a Q: [325997]
    Other proteins in same PDB: d5l6aa_, d5l6ab_, d5l6af_, d5l6ag_, d5l6ah_, d5l6ai_, d5l6aj_, d5l6ak_, d5l6al_, d5l6am_, d5l6an_, d5l6ao_, d5l6ap_, d5l6at_, d5l6au_, d5l6av_, d5l6aw_, d5l6ax_, d5l6ay_, d5l6az_
    automated match to d1iruf_
    complexed with 79l, cl, mes, mg

Details for d5l6aq_

PDB Entry: 5l6a (more details), 2.8 Å

PDB Description: yeast 20s proteasome with mouse beta5i (1-138) and mouse beta6 (97- 111; 118-133) in complex with epoxyketone inhibitor 17
PDB Compounds: (Q:) Proteasome subunit alpha type-4

SCOPe Domain Sequences for d5l6aq_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5l6aq_ d.153.1.0 (Q:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
gydralsifspdghifqveyaleavkrgtcavgvkgkncvvlgcerrstlklqdtritps
kvskidshvvlsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqrytq
sggvrpfgvstliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknydrk
eppatveecvkltvrsllevvqtgaknieitvvkpdsdivalsseeinqyvtqieqekqe

SCOPe Domain Coordinates for d5l6aq_:

Click to download the PDB-style file with coordinates for d5l6aq_.
(The format of our PDB-style files is described here.)

Timeline for d5l6aq_:

  • d5l6aq_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-13