Lineage for d5l62j_ (5l62 J:)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2548740Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2548741Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2548925Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 2550690Protein Proteasome beta subunit (catalytic) [56252] (7 species)
  7. 2550699Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (176 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 2552213Domain d5l62j_: 5l62 J: [325791]
    Other proteins in same PDB: d5l62b_, d5l62c_, d5l62d_, d5l62e_, d5l62f_, d5l62g_, d5l62h_, d5l62k_, d5l62l_, d5l62m_, d5l62p_, d5l62q_, d5l62r_, d5l62s_, d5l62t_, d5l62u_, d5l62v_, d5l62y_, d5l62z_
    automated match to d1rypk_
    complexed with 79p, cl, mes, mg

Details for d5l62j_

PDB Entry: 5l62 (more details), 2.8 Å

PDB Description: yeast 20s proteasome with human beta5c (1-138) and human beta6 (97- 111; 118-133) in complex with epoxyketone inhibitor 16
PDB Compounds: (J:) Proteasome subunit beta type-4

SCOPe Domain Sequences for d5l62j_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5l62j_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d5l62j_:

Click to download the PDB-style file with coordinates for d5l62j_.
(The format of our PDB-style files is described here.)

Timeline for d5l62j_: