Lineage for d5l5jm_ (5l5j M:)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2548740Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2548741Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2548925Family d.153.1.4: Proteasome subunits [56251] (4 protein domains)
  6. 2550690Protein Proteasome beta subunit (catalytic) [56252] (7 species)
  7. 2550699Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (175 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 2552456Domain d5l5jm_: 5l5j M: [325679]
    Other proteins in same PDB: d5l5jb_, d5l5jc_, d5l5jd_, d5l5je_, d5l5jf_, d5l5jg_, d5l5jh_, d5l5jk_, d5l5jl_, d5l5jp_, d5l5jq_, d5l5jr_, d5l5js_, d5l5jt_, d5l5ju_, d5l5jv_, d5l5jy_, d5l5jz_
    automated match to d4qz7m_
    complexed with 6n5, cl, mes, mg

Details for d5l5jm_

PDB Entry: 5l5j (more details), 2.9 Å

PDB Description: yeast 20s proteasome with human beta5i (1-138) and human beta6 (97- 111; 118-133) in complex with epoxyketone inhibitor 14
PDB Compounds: (M:) Proteasome subunit beta type-7

SCOPe Domain Sequences for d5l5jm_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5l5jm_ d.153.1.4 (M:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d5l5jm_:

Click to download the PDB-style file with coordinates for d5l5jm_.
(The format of our PDB-style files is described here.)

Timeline for d5l5jm_: