Lineage for d5l5qm_ (5l5q M:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2201124Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2201125Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2201309Family d.153.1.4: Proteasome subunits [56251] (4 protein domains)
  6. 2203920Protein automated matches [190144] (11 species)
    not a true protein
  7. 2204191Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189752] (157 PDB entries)
  8. 2282280Domain d5l5qm_: 5l5q M: [325581]
    Other proteins in same PDB: d5l5qa_, d5l5qc_, d5l5qd_, d5l5qe_, d5l5qg_, d5l5qi_, d5l5qj_, d5l5qk_, d5l5ql_, d5l5qn_, d5l5qo_, d5l5qq_, d5l5qr_, d5l5qs_, d5l5qu_, d5l5qw_, d5l5qx_, d5l5qy_, d5l5qz_
    automated match to d4qz7m_
    complexed with 6nv, cl, mes, mg

Details for d5l5qm_

PDB Entry: 5l5q (more details), 2.8 Å

PDB Description: yeast 20s proteasome with human beta5i (1-138) and human beta6 (97- 111; 118-133) in complex with epoxyketone 18
PDB Compounds: (M:) Proteasome subunit beta type-7

SCOPe Domain Sequences for d5l5qm_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5l5qm_ d.153.1.4 (M:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
tqqpivtgtsvismkydngviiaadnlgsygsllrfngverlipvgdntvvgisgdisdm
qhierllkdlvtenaydnpladaeealepsyifeylatvmyqrrskmnplwnaiivagvq
sngdqflryvnllgvtyssptlatgfgahmanpllrkvvdresdipkttvqvaeeaivna
mrvlyyrdarssrnfslaiidkntgltfkknlqvenmkwdfakdikgygtqki

SCOPe Domain Coordinates for d5l5qm_:

Click to download the PDB-style file with coordinates for d5l5qm_.
(The format of our PDB-style files is described here.)

Timeline for d5l5qm_:

  • d5l5qm_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-12