Lineage for d5kdpc1 (5kdp C:53-846)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2850785Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
    contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
  4. 2850786Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) (S)
    duplication: the N- and C-terminal halves have similar topologies
  5. 2850879Family c.7.1.0: automated matches [275322] (1 protein)
    not a true family
  6. 2850880Protein automated matches [275324] (7 species)
    not a true protein
  7. 2850906Species Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries)
  8. 2850918Domain d5kdpc1: 5kdp C:53-846 [323401]
    Other proteins in same PDB: d5kdpa2, d5kdpc2
    automated match to d5a0uh_
    complexed with mli, na; mutant

Details for d5kdpc1

PDB Entry: 5kdp (more details), 1.9 Å

PDB Description: e491a mutant of choline tma-lyase
PDB Compounds: (C:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d5kdpc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5kdpc1 c.7.1.0 (C:53-846) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
gipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetap
lviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreev
fpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmld
iqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrk
aelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyrad
idsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatn
dltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmml
akgvsiedardyclmgcvapqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpd
mgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgr
dvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqil
adclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllga
sangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpe
genglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckd
vqdeiisrtmlhgf

SCOPe Domain Coordinates for d5kdpc1:

Click to download the PDB-style file with coordinates for d5kdpc1.
(The format of our PDB-style files is described here.)

Timeline for d5kdpc1:

View in 3D
Domains from same chain:
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d5kdpc2