Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily) contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel |
Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) duplication: the N- and C-terminal halves have similar topologies |
Family c.7.1.0: automated matches [275322] (1 protein) not a true family |
Protein automated matches [275324] (7 species) not a true protein |
Species Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries) |
Domain d5kdpc1: 5kdp C:53-846 [323401] Other proteins in same PDB: d5kdpa2, d5kdpc2 automated match to d5a0uh_ complexed with mli, na; mutant |
PDB Entry: 5kdp (more details), 1.9 Å
SCOPe Domain Sequences for d5kdpc1:
Sequence; same for both SEQRES and ATOM records: (download)
>d5kdpc1 c.7.1.0 (C:53-846) automated matches {Desulfovibrio alaskensis [TaxId: 207559]} gipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetap lviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreev fpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmld iqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrk aelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyrad idsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatn dltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmml akgvsiedardyclmgcvapqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpd mgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgr dvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqil adclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllga sangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpe genglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckd vqdeiisrtmlhgf
Timeline for d5kdpc1: