SCOPe 2.07: Domain d5l9ma_: 5l9m A:

Lineage for d5l9ma_ (5l9m A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (158 species)
   not a true protein

7. Species Agrobacterium fabrum [TaxId:176299] [258501] (13 PDB entries)

8. Domain d5l9ma_: 5l9m A: [323044]
   automated match to d4eq9a_
   complexed with edo, snw

Details for d5l9ma_

PDB Entry: 5l9m, 1.93 Å

PDB Description: structure of agrobacterium tumefaciens b6 strain pbp soca complexed with deoxyfructosylglutamine (dfg)

PDB Compounds: (A:) Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein

SCOPe Domain Sequences for d5l9ma_:

Sequence, based on SEQRES records:

>d5l9ma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}
dnplglidpttisvgtmgdakpyafttadgnftgfdielflnvagrlgfkkeqvvftgqe
fsalmpsvangrfdvaaaaigttakrketvdfsdgylagflsvltseagitdaaglkgkr
lgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngtvdahfldfeaakdysarypal
kiavnipsfdapagfvirkgndalrnaldkglkeamqdgtwkklhekwfpgtpmpaaylp
k

Sequence, based on observed residues (ATOM records):

>d5l9ma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}
dnplglidpttisvgtmgdakpyafttadgnftgfdielflnvagrlgfkkeqvvftgqe
fsalmpsvangrfdvaaaaigttakrketvdfsdgylagflsvltstdaaglkgkrlgvv
qgtlqeiyaeknfagtdlvkfpdnnsavsalnngtvdahfldfeaakdysarypalkiav
nipsfdapagfvirkgndalrnaldkglkeamqdgtwkklhekwfpgtpmpaaylpk

Timeline for d5l9ma_:

• d5l9ma_ first appeared in SCOPe 2.06
  
• d5l9ma_ does not appear in SCOPe 2.08