Lineage for d5ddxb_ (5ddx B:)

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2162067Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2162068Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2163419Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2163420Protein automated matches [190039] (140 species)
    not a true protein
  7. 2163929Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (101 PDB entries)
  8. 2164074Domain d5ddxb_: 5ddx B: [322483]
    Other proteins in same PDB: d5ddxa_
    automated match to d4nf8b_
    complexed with 5dy, gly, peg, trs

Details for d5ddxb_

PDB Entry: 5ddx (more details), 1.95 Å

PDB Description: crystal structure of glun1/glun2a nmda receptor agonist binding domains with glycine and antagonist, 4-(3-fluoropropyl)phenyl-acepc
PDB Compounds: (B:) Glutamate receptor ionotropic, NMDA 2A

SCOPe Domain Sequences for d5ddxb_:

Sequence, based on SEQRES records: (download)

>d5ddxb_ c.94.1.0 (B:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}

Sequence, based on observed residues (ATOM records): (download)

>d5ddxb_ c.94.1.0 (B:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}

SCOPe Domain Coordinates for d5ddxb_:

Click to download the PDB-style file with coordinates for d5ddxb_.
(The format of our PDB-style files is described here.)

Timeline for d5ddxb_:

  • d5ddxb_ appears in periodic updates to SCOPe 2.06 starting on 2016-09-14
  • d5ddxb_ became obsolete in SCOPe 2.07