SCOPe 2.06: Domain d5k3ja1: 5k3j A:3-278

Lineage for d5k3ja1 (5k3j A:3-278)

1. Root: SCOPe 2.06

2. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)

3. Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
   2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology

4. Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families)
   flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)

5. Family e.6.1.0: automated matches [227203] (1 protein)
   not a true family

6. Protein automated matches [226934] (25 species)
   not a true protein

7. Species Caenorhabditis elegans [TaxId:6239] [321813] (3 PDB entries)

8. Domain d5k3ja1: 5k3j A:3-278 [322216]
   Other proteins in same PDB: d5k3ja2, d5k3ja3, d5k3ja4, d5k3jb2, d5k3jb3, d5k3jb4
   automated match to d2ddha3
   complexed with 6qa, atp, fad, mg

Details for d5k3ja1

PDB Entry: 5k3j, 2.68 Å

PDB Description: crystals structure of acyl-coa oxidase-2 in caenorhabditis elegans bound with fad, ascaroside-coa, and atp

PDB Compounds: (A:) Acyl-coenzyme A oxidase

SCOPe Domain Sequences for d5k3ja1:

Sequence; same for both SEQRES and ATOM records:

>d5k3ja1 e.6.1.0 (A:3-278) automated matches {Caenorhabditis elegans [TaxId: 6239]}
nrsirdgdnpelleerrmatfdtdkmaaviygseefarrrreitdavskipeladikpyp
fltreekvtegtrkisiltkylnqlidrdneeeslhlhrevigyeghpfalhdalfiptl
qsqasdeqqekwlerarrreiigcyaqtelghgsnlrnlettavydiasqefvlhtpttt
alkwwpgalgkscnyalvvaeliikrnnygphffmvqlrdekthiplkgvtvgdigpkmn
fnaadngylglnnlrvprtnllmrhckveadgtyvk

Timeline for d5k3ja1:

• d5k3ja1 is new in SCOPe 2.06-stable
  
• d5k3ja1 appears in SCOPe 2.07
  
• d5k3ja1 appears in the current release, SCOPe 2.08