SCOPe 2.08: Domain d5cvpa_: 5cvp A:

Lineage for d5cvpa_ (5cvp A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.0: automated matches [191587] (1 protein)
   not a true family

6. Protein automated matches [191055] (20 species)
   not a true protein

7. Species Xanthomonas oryzae [TaxId:64187] [188927] (16 PDB entries)

8. Domain d5cvpa_: 5cvp A: [320262]
   automated match to d3dlda_
   complexed with 56f, act, cd, na

Details for d5cvpa_

PDB Entry: 5cvp, 2 Å

PDB Description: structure of xoo1075, a peptide deformylase from xanthomonas oryzae pv oryze, in complex with fragment 571

PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d5cvpa_:

Sequence, based on SEQRES records:

>d5cvpa_ d.167.1.0 (A:) automated matches {Xanthomonas oryzae [TaxId: 64187]}
mirdiirmgdkrllrvapqvtnlgsaelhalvsdmfetmgaahgvglaapqiavdlqlmv
fgfeaserypeapavpltalanaqieplsdemengwegclsipglravipryryiryrgf
apdgspiereaegfharvvqheydhlvgrlypsrienfdtfgfddvlsydl

Sequence, based on observed residues (ATOM records):

>d5cvpa_ d.167.1.0 (A:) automated matches {Xanthomonas oryzae [TaxId: 64187]}
mirdiirmgdkrllrvapqvtnlgsaelhalvsdmfetmgaahgvglaapqiavdlqlmv
fgfeaeapavpltalanaqieplsdemengwegclsipglravipryryiryrgfapdgs
piereaegfharvvqheydhlvgrlypsrienfdtfgfddvlsydl

Timeline for d5cvpa_:

• d5cvpa_ first appeared in SCOPe 2.06
  
• d5cvpa_ appears in SCOPe 2.07