Lineage for d5jp3h1 (5jp3 H:1-75)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2177211Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2177212Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2177213Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2177487Protein Ubiquitin [54238] (8 species)
  7. 2177587Species Human (Homo sapiens) [TaxId:9606] [54239] (209 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 2177932Domain d5jp3h1: 5jp3 H:1-75 [320160]
    Other proteins in same PDB: d5jp3b2, d5jp3d2, d5jp3f2, d5jp3h2
    automated match to d3rula_

Details for d5jp3h1

PDB Entry: 5jp3 (more details), 2.9 Å

PDB Description: structure of xanthomonas campestris effector protein xopd bound to ubiquitin
PDB Compounds: (H:) Polyubiquitin-B

SCOPe Domain Sequences for d5jp3h1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5jp3h1 d.15.1.1 (H:1-75) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg

SCOPe Domain Coordinates for d5jp3h1:

Click to download the PDB-style file with coordinates for d5jp3h1.
(The format of our PDB-style files is described here.)

Timeline for d5jp3h1: