Lineage for Species: Zebrafish (Danio rerio) [TaxId: 7955]

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453552Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2453553Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2453947Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2453948Protein automated matches [190626] (9 species)
    not a true protein
  7. 2454040Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (31 PDB entries)

PDB entries in Species: Zebrafish (Danio rerio) [TaxId: 7955]:

  1. Domain(s) for 5eef:
    1. 2454065Domain d5eefa1: 5eef A:60-417 [319960]
      Other proteins in same PDB: d5eefa2, d5eefb2
      automated match to d3c10b_
      complexed with edo, nh4, so4, tsn, zn
    2. 2454066Domain d5eefb1: 5eef B:60-417 [320009]
      Other proteins in same PDB: d5eefa2, d5eefb2
      automated match to d3c10b_
      complexed with edo, nh4, so4, tsn, zn
  2. Domain(s) for 5eei:
    1. 2454042Domain d5eeia_: 5eei A: [319974]
      automated match to d3c10c_
      complexed with cl, edo, gol, k, mg, shh, zn
    2. 2454043Domain d5eeib_: 5eei B: [319958]
      automated match to d3c10c_
      complexed with cl, edo, gol, k, mg, shh, zn
  3. Domain(s) for 5eek:
  4. Domain(s) for 5eem:
    1. 2454063Domain d5eema_: 5eem A: [319981]
      automated match to d3c10c_
      complexed with fmt, k, na, zn
    2. 2454064Domain d5eemb_: 5eem B: [319914]
      automated match to d3c10c_
      complexed with fmt, k, na, zn
  5. Domain(s) for 5een:
    1. 2454055Domain d5eena_: 5een A: [319920]
      automated match to d3c10c_
      complexed with 5og, cl, k, zn
    2. 2454056Domain d5eenb_: 5een B: [319924]
      automated match to d3c10c_
      complexed with 5og, cl, k, zn
  6. Domain(s) for 5ef7:
    1. 2454057Domain d5ef7a_: 5ef7 A: [320023]
      automated match to d3c10c_
      complexed with 5oj, k, zn
    2. 2454058Domain d5ef7b_: 5ef7 B: [320051]
      automated match to d3c10c_
      complexed with 5oj, k, zn
  7. Domain(s) for 5ef8:
    1. 2454072Domain d5ef8a_: 5ef8 A: [319972]
      automated match to d3c10c_
      complexed with edo, gol, k, lbh, zn
    2. 2454073Domain d5ef8b_: 5ef8 B: [320050]
      automated match to d3c10c_
      complexed with edo, gol, k, lbh, zn
  8. Domain(s) for 5efb:
  9. Domain(s) for 5efg:
    1. 2454069Domain d5efga_: 5efg A: [319969]
      automated match to d3c10c_
      complexed with act, k, zn
    2. 2454070Domain d5efgd_: 5efg D: [319942]
      automated match to d3c10c_
      complexed with act, k, zn
  10. Domain(s) for 5efh:
    1. 2454067Domain d5efha_: 5efh A: [319985]
      automated match to d3c10c_
      complexed with br, edo, fks, gol, k, zn
    2. 2454068Domain d5efhd_: 5efh D: [319993]
      automated match to d3c10c_
      complexed with br, edo, fks, gol, k, zn
  11. Domain(s) for 5efj:
  12. Domain(s) for 5efk:
    • 2454054Domain d5efkb_: 5efk B: [319929]
      automated match to d3c10c_
      complexed with edo, gol, k, mcm, no3, peg, zn; mutant
  13. Domain(s) for 5g0g:
  14. Domain(s) for 5g0h:
  15. Domain(s) for 5g0i:
    1. 2454059Domain d5g0ia1: 5g0i A:58-419 [319962]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    2. 2454060Domain d5g0ia2: 5g0i A:442-801 [319963]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    3. 2454061Domain d5g0ib1: 5g0i B:59-418 [320069]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    4. 2454062Domain d5g0ib2: 5g0i B:442-801 [320070]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
  16. Domain(s) for 5w5k:
    1. 3053959Domain d5w5kc1: 5w5k C:440-798 [354021]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
    2. 3054079Domain d5w5ka1: 5w5k A:440-798 [354141]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
    3. 3054104Domain d5w5kb1: 5w5k B:440-798 [354166]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
  17. Domain(s) for 5wgi:
  18. Domain(s) for 5wgk:
  19. Domain(s) for 5wgl:
    1. 2454047Domain d5wgla_: 5wgl A: [342628]
      automated match to d3c10c_
      complexed with ah4, edo, flc, k, peg, zn
    2. 2454048Domain d5wglb_: 5wgl B: [342477]
      automated match to d3c10c_
      complexed with ah4, edo, flc, k, peg, zn
  20. Domain(s) for 5wgm:
    1. 2454050Domain d5wgma1: 5wgm A:440-798 [342525]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
    2. 2454051Domain d5wgmb1: 5wgm B:440-798 [342473]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
    3. 2454052Domain d5wgmc1: 5wgm C:440-798 [342561]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
  21. Domain(s) for 6cgp:
  22. Domain(s) for 6csp:
    1. 3052699Domain d6cspa_: 6csp A: [352761]
      automated match to d5g0ha_
      complexed with cl, edo, fbm, k, peg, zn
    2. 3052705Domain d6cspb_: 6csp B: [352767]
      automated match to d5g0ha_
      complexed with cl, edo, fbm, k, peg, zn
  23. Domain(s) for 6csq:
    1. 3052668Domain d6csqb_: 6csq B: [352730]
      automated match to d5g0ha_
      complexed with f9p, k, zn
    2. 3052669Domain d6csqa_: 6csq A: [352731]
      automated match to d5g0ha_
      complexed with f9p, k, zn
  24. Domain(s) for 6csr:
    1. 3052934Domain d6csra_: 6csr A: [352996]
      automated match to d5g0ha_
      complexed with bho, edo, k, zn
    2. 3052965Domain d6csrb_: 6csr B: [353027]
      automated match to d5g0ha_
      complexed with bho, edo, k, zn
  25. Domain(s) for 6css:
    1. 3052667Domain d6cssb_: 6css B: [352729]
      automated match to d5g0ha_
      complexed with edo, fbj, k, zn
    2. 3052914Domain d6cssa_: 6css A: [352976]
      automated match to d5g0ha_
      complexed with edo, fbj, k, zn
  26. Domain(s) for 6cw8:
    1. 3060299Domain d6cw8b_: 6cw8 B: [360361]
      automated match to d5g0ha_
      complexed with edo, fgy, k, zn
    2. 3060334Domain d6cw8a_: 6cw8 A: [360396]
      automated match to d5g0ha_
      complexed with edo, fgy, k, zn
  27. Domain(s) for 6dvl:
    1. 3056667Domain d6dvla_: 6dvl A: [356729]
      automated match to d5g0ha_
      complexed with hbg, k, zn
    2. 3056689Domain d6dvlb_: 6dvl B: [356751]
      automated match to d5g0ha_
      complexed with hbg, k, zn
  28. Domain(s) for 6dvm:
    1. 3056697Domain d6dvma_: 6dvm A: [356759]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    2. 3056730Domain d6dvmb_: 6dvm B: [356792]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    3. 3056756Domain d6dvmd_: 6dvm D: [356818]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    4. 3056811Domain d6dvmc_: 6dvm C: [356873]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
  29. Domain(s) for 6dvn:
    1. 3056644Domain d6dvnb_: 6dvn B: [356706]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    2. 3056647Domain d6dvnd_: 6dvn D: [356709]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    3. 3056707Domain d6dvna_: 6dvn A: [356769]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    4. 3056755Domain d6dvnc_: 6dvn C: [356817]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
  30. Domain(s) for 6dvo:
  31. Domain(s) for 6mr5:
    1. 3060771Domain d6mr5b_: 6mr5 B: [360833]
      automated match to d5g0ha_
      complexed with edo, flc, k, peg, w45, zn
    2. 3060772Domain d6mr5a_: 6mr5 A: [360834]
      automated match to d5g0ha_
      complexed with edo, flc, k, peg, w45, zn

More info for Species Zebrafish (Danio rerio) [TaxId:7955] from c.42.1.0 automated matches

Timeline for Species Zebrafish (Danio rerio) [TaxId:7955] from c.42.1.0 automated matches: