Lineage for d2pdaa2 (2pda A:786-1232)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2864564Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2864565Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2865181Family c.36.1.12: PFOR PP module [88771] (1 protein)
    domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains
  6. 2865182Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI [88772] (1 species)
  7. 2865183Species Desulfovibrio africanus [TaxId:873] [88773] (10 PDB entries)
  8. 2865202Domain d2pdaa2: 2pda A:786-1232 [31836]
    Other proteins in same PDB: d2pdaa1, d2pdaa3, d2pdaa4, d2pdaa5, d2pdab1, d2pdab3, d2pdab4, d2pdab5
    complexed with ca, mg, pyr, sf4, tpp

Details for d2pdaa2

PDB Entry: 2pda (more details), 3 Å

PDB Description: crystal structure of the complex between pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus and pyruvate.
PDB Compounds: (A:) protein (pyruvate-ferredoxin oxidoreductase)

SCOPe Domain Sequences for d2pdaa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2pdaa2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

SCOPe Domain Coordinates for d2pdaa2:

Click to download the PDB-style file with coordinates for d2pdaa2.
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Timeline for d2pdaa2: