Lineage for Species: Human betacoronavirus 2c jordan-n3/2012 [TaxId: 1306931]
- Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds) 
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-AsnSuperfamily d.3.1: Cysteine proteinases [54001] (24 families) 
the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
C-terminal part of Pfam PF08715
Protein Papain-like protease PLpro, catalytic domain [310795] (3 species) 
Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] [311427] (5 PDB entries)
PDB entries in Species: Human betacoronavirus 2c jordan-n3/2012 [TaxId: 1306931]:
- Domain(s) for 4rez:
Domain d4reza2: 4rez A:1543-1803 [309422]
Other proteins in same PDB: d4reza1
automated match to d4p16a2
complexed with pgo, zn
- Domain(s) for 4rf0:
Domain d4rf0a2: 4rf0 A:1543-1801 [300657]
Other proteins in same PDB: d4rf0a1, d4rf0b_
automated match to d4p16a2
complexed with 3cn, so4, zn
- Domain(s) for 4rf1:
Domain d4rf1a2: 4rf1 A:1543-1803 [300659]
Other proteins in same PDB: d4rf1a1, d4rf1b_
automated match to d4p16a2
complexed with 3cn, pgo, zn
- Domain(s) for 5w8t:
Domain d5w8ta2: 5w8t A:62-320 [339684]
Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
automated match to d4pt5a2
complexed with aye, mpd, zn
Domain d5w8tc2: 5w8t C:62-320 [339686]
Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
automated match to d4pt5a2
complexed with aye, mpd, zn
- Domain(s) for 5w8u:
Domain d5w8ua2: 5w8u A:62-320 [339689]
Other proteins in same PDB: d5w8ua1, d5w8ub_, d5w8uc1, d5w8ud_
automated match to d4pt5a2
complexed with aye, mpd, zn
Domain d5w8uc2: 5w8u C:62-320 [339682]
Other proteins in same PDB: d5w8ua1, d5w8ub_, d5w8uc1, d5w8ud_
automated match to d4pt5a2
complexed with aye, mpd, zn
More info for Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain
Timeline for Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain:
- Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain is new in SCOPe 2.06-stable
- Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain appears in SCOPe 2.07
- Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain appears in the current release, SCOPe 2.08