Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2173267Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2173268Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2174136Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
    C-terminal part of Pfam PF08715
  6. 2174156Protein automated matches [310868] (5 species)
    not a true protein

Species:

  1. 2174157Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)
  2. 2174160Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)
  3. 2174162Human sars coronavirus [TaxId:227859] [333837] (1 PDB entry)
  4. 2174165SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)
    1. Domain for 3e9s:
    2. Domain for 4m0w:
    3. Domain for 4mm3:
    4. Domains for 5tl7:
      1. 2174169Domain d5tl7b2: 5tl7 B:63-316 [333881]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
      2. 2174170Domain d5tl7d2: 5tl7 D:63-316 [333892]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
  5. 2174171Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)
    1. Domain for 4ovz:
    2. Domain for 4ow0:

More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain:

  • Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain is new in SCOPe 2.06-stable
  • Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain appears in the current release, SCOPe 2.07