Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2097883Fold c.8: The "swivelling" beta/beta/alpha domain [52008] (10 superfamilies)
    3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
    this domain is thought to be mobile in most multi-domain proteins known to contain it
  4. 2097884Superfamily c.8.1: Phosphohistidine domain [52009] (3 families) (S)
    contains barrel, closed, n=7, S=10
  5. 2097916Family c.8.1.0: automated matches [310665] (1 protein)
    not a true family
  6. 2097917Protein automated matches [310840] (3 species)
    not a true protein

Species:

  1. 2097918Trypanosome (Trypanosoma brucei) [TaxId:5691] [311142] (1 PDB entry)
  2. 2289253Flaveria trinervia [TaxId:4227] [332554] (3 PDB entries)
    1. Domains for 5jvj:
      1. 2289254Domain d5jvjb2: 5jvj B:381-515 [332555]
        Other proteins in same PDB: d5jvja1, d5jvja3, d5jvjb1, d5jvjb3
        automated match to d1vbga2
        complexed with mg, pep
      2. 2289523Domain d5jvja2: 5jvj A:381-515 [332824]
        Other proteins in same PDB: d5jvja1, d5jvja3, d5jvjb1, d5jvjb3
        automated match to d1vbga2
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2289261Domain d5jvla2: 5jvl A:381-515 [332562]
        Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
        automated match to d1vbga2
        complexed with 6nq, mg, pep
      2. 2289295Domain d5jvld2: 5jvl D:381-515 [332596]
        Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
        automated match to d1vbga2
        complexed with 6nq, mg, pep
      3. 2289396Domain d5jvlc2: 5jvl C:381-515 [332697]
        Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
        automated match to d1vbga2
        complexed with 6nq, mg, pep
    3. Domains for 5lu4:
      1. 2291179Domain d5lu4b2: 5lu4 B:381-515 [334480]
        Other proteins in same PDB: d5lu4a1, d5lu4a3, d5lu4b1, d5lu4b3
        automated match to d1vbga2
        complexed with adp, mg, pyr
      2. 2291188Domain d5lu4a2: 5lu4 A:381-515 [334489]
        Other proteins in same PDB: d5lu4a1, d5lu4a3, d5lu4b1, d5lu4b3
        automated match to d1vbga2
        complexed with adp, mg, pyr
  3. 2289329Flaveria pringlei [TaxId:4226] [332630] (1 PDB entry)

More info for Protein automated matches from c.8.1.0: automated matches

Timeline for Protein automated matches from c.8.1.0: automated matches:

  • Protein automated matches from c.8.1.0: automated matches is new in SCOPe 2.06-stable