SCOPe 2.07: Domain d4jk1y_: 4jk1 Y:

Lineage for d4jk1y_ (4jk1 Y:)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families)

5. Family a.4.13.2: Sigma4 domain [88665] (5 proteins)

6. Protein Sigma70 (SigA, RpoD) [88666] (4 species)
   Pfam PF03979

7. Species Escherichia coli [TaxId:562] [116816] (3 PDB entries)
   Uniprot P00579 546-613

8. Domain d4jk1y_: 4jk1 Y: [307607]
   protein/DNA complex; complexed with g4p, zn

Details for d4jk1y_

PDB Entry: 4jk1, 3.9 Å

PDB Description: X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraphosphate (ppGpp)

PDB Compounds: (Y:) Escherichia coli RNA polymerase sigma70 subunit

SCOPe Domain Sequences for d4jk1y_:

Sequence, based on SEQRES records:

>d4jk1y_ a.4.13.2 (Y:) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
tdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveae
earlsdlitgfvdpnaeedlaptathvgselsqedldddededeedgdddsadddnsidp
elarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmr
vmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvs
eevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakky
tnrglqfldliqegniglmkavdkfeyrrgykfstyatwwirqaitrsiadqartiripv
hmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigdd
edshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytle
evgkqfdvtrerirqieakalrklrhpsrsevlrs

Sequence, based on observed residues (ATOM records):

>d4jk1y_ a.4.13.2 (Y:) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
tdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveae
idpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvn
smrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklh
dvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisia
kkytnrglqfldliqegniglmkavdkfeyrrgykfstyatwwirqaitrsiadqartir
ipvhmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpi
gddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdy
tleevgkqfdvtrerirqieakalrklrhpsrsevlrs

Timeline for d4jk1y_:

• d4jk1y_ first appeared in SCOPe 2.06
  
• d4jk1y_ does not appear in SCOPe 2.08