Lineage for d3ku4a_ (3ku4 A:)

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2140812Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2140829Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2141796Family c.56.2.0: automated matches [191488] (1 protein)
    not a true family
  6. 2141797Protein automated matches [190781] (41 species)
    not a true protein
  7. 2141896Species Cow (Bos taurus) [TaxId:9913] [311305] (4 PDB entries)
  8. 2141897Domain d3ku4a_: 3ku4 A: [305724]
    automated match to d2xrfa_
    complexed with so4

Details for d3ku4a_

PDB Entry: 3ku4 (more details), 2.1 Å

PDB Description: Trapping of an oxocarbenium ion intermediate in UP crystals
PDB Compounds: (A:) Uridine phosphorylase

SCOPe Domain Sequences for d3ku4a_:

Sequence, based on SEQRES records: (download)

>d3ku4a_ c.56.2.0 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
ndlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggspsrmkafikyvame
lgfahpgadypnicegtdryamfkvgpvlsvshgmgvpsiaimlhelikllyhahcsgvt
lirigtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntdldeqlvqelarcsa
elgefptvvgntmctldfyegqgrldgalcsytekdkqdylraayaagirniemeasvfa
amcnacglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgqfikkrlm

Sequence, based on observed residues (ATOM records): (download)

>d3ku4a_ c.56.2.0 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
ndlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggspsrmkafikyvame
lgfahpdypnicegtdryamfkvgpvlsvshgmgvpsiaimlhelikllyhahcsgvtli
rigtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntdldeqlvqelarcsael
gefptvvgntmctldfyegqgrldgalcsytekdkqdylraayaagirniemeasvfaam
cnacglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgqfikkrlm

SCOPe Domain Coordinates for d3ku4a_:

Click to download the PDB-style file with coordinates for d3ku4a_.
(The format of our PDB-style files is described here.)

Timeline for d3ku4a_: