SCOPe 2.06: Domain d2herb_: 2her B:

Lineage for d2herb_ (2her B:)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (37 species)
   not a true protein

7. Species Cryptosporidium parvum [TaxId:5807] [255516] (2 PDB entries)

8. Domain d2herb_: 2her B: [303966]
   automated match to d2q58b_
   complexed with mg, zol

Details for d2herb_

PDB Entry: 2her, 2.37 Å

PDB Description: Cryptosporidium parvum putative polyprenyl pyrophosphate synthase (cgd4_2550) in complex with zoledronate

PDB Compounds: (B:) farnesyl pyrophosphate synthase

SCOPe Domain Sequences for d2herb_:

Sequence, based on SEQRES records:

>d2herb_ a.128.1.0 (B:) automated matches {Cryptosporidium parvum [TaxId: 5807]}
ydytdfinyydkfkvivynvlkklplndeirkpvieyylncidynvkkgkhirgkilvli
sslssaysnikrdsiyllgwvveaiqaliliaddimdsgkfrrgapcwyivhgqsnaind
ifflkmlslslifelssvfgndivmkiqkiynesifftvlgqhldlsyfdlskadkiser
yfsmvemktsrytfympvffgltlseiqvssaqlnlieailyklgefyqvhndvsdylfn
dsnaddicrfkltwplqksfeiadeemklkisenygknsslvkdcynllkinehyleyqr
naldyliklvkditddslqkvfihlihqiselitnsrsn

Sequence, based on observed residues (ATOM records):

>d2herb_ a.128.1.0 (B:) automated matches {Cryptosporidium parvum [TaxId: 5807]}
ydytdfinyydkfkvivynvlkklpvieyylncidynvkkgkhirgkilvlisslssays
nikrdsiyllgwvveaiqaliliaddimdsgkfrrgapcwyivhgqsnaindifflkmls
lslifelssvfgndivmkiqkiynesifftvlgqhldlsyfdlskadkiseryfsmvemk
tsrytfympvffgltlseiqvssaqlnlieailyklgefyqvhndvsdylfndsnaddic
rfkltwplqksfeiadeemklkisenygknsslvkdcynllkinehyleyqrnaldylik
lvkditddslqkvfihlihqiselitnsrsn

Timeline for d2herb_:

• d2herb_ is new in SCOPe 2.06-stable
  
• d2herb_ appears in SCOPe 2.07
  
• d2herb_ appears in the current release, SCOPe 2.08