Lineage for d1ypdb2 (1ypd B:182-360)

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2121033Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like
  4. 2121034Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families) (S)
    binds cofactor molecules in the opposite direction than classical Rossmann fold
  5. 2121434Family c.31.1.0: automated matches [191352] (1 protein)
    not a true family
  6. 2121435Protein automated matches [190312] (11 species)
    not a true protein
  7. 2121439Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255616] (4 PDB entries)
  8. 2121453Domain d1ypdb2: 1ypd B:182-360 [303408]
    Other proteins in same PDB: d1ypda1, d1ypda3, d1ypdb1, d1ypdb3
    automated match to d2vk1a2
    complexed with mg, tpp

Details for d1ypdb2

PDB Entry: 1ypd (more details), 2.4 Å

PDB Description: thdp dependent pyruvate decarboyxlase from yeast (form b)
PDB Compounds: (B:) pyruvate decarboxylase (form b)

SCOPe Domain Sequences for d1ypdb2:

Sequence, based on SEQRES records: (download)

>d1ypdb2 c.31.1.0 (B:182-360) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
qtpidmslkpndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqfp
avvtpmgkgsideqhpryggvyvgtlskpevkeavesadlilsvgallsdfntgsfsysy
ktknivefhsdhmkirnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavp

Sequence, based on observed residues (ATOM records): (download)

>d1ypdb2 c.31.1.0 (B:182-360) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
qtpidmslkpndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqfp
avvtpmgkgsideqhpryggvyvgtlskpevkeavesadlilsvgallnivefhsdhmki
rnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavp

SCOPe Domain Coordinates for d1ypdb2:

Click to download the PDB-style file with coordinates for d1ypdb2.
(The format of our PDB-style files is described here.)

Timeline for d1ypdb2: