Lineage for d1q9ta3 (1q9t A:1-107)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2022563Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2022956Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (51 PDB entries)
  8. 2022971Domain d1q9ta3: 1q9t A:1-107 [302920]
    Other proteins in same PDB: d1q9ta4, d1q9tb3, d1q9tb4
    automated match to d3t65a1
    complexed with mg, zn

Details for d1q9ta3

PDB Entry: 1q9t (more details), 1.74 Å

PDB Description: S25-2- a(2-4)Kdo disaccharide complex
PDB Compounds: (A:) S25-2 Fab (IgG1k) light chain

SCOPe Domain Sequences for d1q9ta3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1q9ta3 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d1q9ta3:

Click to download the PDB-style file with coordinates for d1q9ta3.
(The format of our PDB-style files is described here.)

Timeline for d1q9ta3:

View in 3D
Domains from same chain:
(mouse over for more information)