Lineage for d1o09a1 (1o09 A:3-79)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2199510Fold d.66: Alpha-L RNA-binding motif [55173] (1 superfamily)
    alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta
  4. 2199511Superfamily d.66.1: Alpha-L RNA-binding motif [55174] (5 families) (S)
    common motif in otherwise different folds
  5. 2199613Family d.66.1.6: YbcJ-like [103046] (1 protein)
    overall topological similarity to the TyrRS C-domain
    automatically mapped to Pfam PF13275
  6. 2199614Protein Hypothetical protein YbcJ [103047] (1 species)
  7. 2199615Species Escherichia coli [TaxId:562] [103048] (2 PDB entries)
  8. 2199616Domain d1o09a1: 1o09 A:3-79 [302792]
    Other proteins in same PDB: d1o09a2
    automated match to d1p9ka_

Details for d1o09a1

PDB Entry: 1o09 (more details)

PDB Description: the solution structure of ybcj from e. coli reveals a recently discovered alfal motif involved in rna-binding
PDB Compounds: (A:) orf, hypothetical protein

SCOPe Domain Sequences for d1o09a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1o09a1 d.66.1.6 (A:3-79) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}

SCOPe Domain Coordinates for d1o09a1:

Click to download the PDB-style file with coordinates for d1o09a1.
(The format of our PDB-style files is described here.)

Timeline for d1o09a1:

  • d1o09a1 is new in SCOPe 2.06-stable
  • d1o09a1 became obsolete in SCOPe 2.07

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