SCOPe 2.07: Domain d1gcxa4: 1gcx A:348-758

Lineage for d1gcxa4 (1gcx A:348-758)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.0: automated matches [227142] (1 protein)
   not a true family

6. Protein automated matches [226844] (11 species)
   not a true protein

7. Species Pyrococcus kodakaraensis [TaxId:69014] [311139] (1 PDB entry)

8. Domain d1gcxa4: 1gcx A:348-758 [302420]
   Other proteins in same PDB: d1gcxa3
   automated match to d3a2fa2

Details for d1gcxa4

PDB Entry: 1gcx, 3 Å

PDB Description: crystal structure of family b dna polymerase from hyperthermophilic archaeon pyrococcus kodakaraensis kod1

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d1gcxa4:

Sequence, based on SEQRES records:

>d1gcxa4 e.8.1.0 (A:348-758) automated matches {Pyrococcus kodakaraensis [TaxId: 69014]}
stgnlvewfllrkayernelapnkpdekelarrrqsyeggyvkeperglwenivyldfrs
lypsiiithnvspdtlnregckeydvapqvghrfckdfpgfipsllgdlleerqkikkkm
katidpierklldyrqraikilansyygyygyararwyckecaesvtawgreyitmtike
ieekygfkviysdtdgffatipgadaetvkkkameflkyinaklpgaleleyegfykrgf
fvtkkkyavideegkittrgleivrrdwseiaketqarvleallkdgdvekavrivkevt
eklskyevppeklviheqitrdlkdykatgphvavakrlaargvkirpgtvisyivlkgs
grigdraipfdefdptkhkydaeyyienqvlpaverilrafgyrkedlryq

Sequence, based on observed residues (ATOM records):

>d1gcxa4 e.8.1.0 (A:348-758) automated matches {Pyrococcus kodakaraensis [TaxId: 69014]}
stgnlvewfllrkayernelapnkpdekelarrrqsyeggyvkeperglwenivyldfrs
lypsiiithnvspdtlnregckeydvapqvghrfckdfpgfipsllgdlleerqkikkkm
katidpierklldyrqraikilansyygyygyararwyckecaesvtawgreyitmtike
ieekygfkviysdtdgffatipgadaetvkkkameflkyinaklpgaleleyegfykrgf
fvtkkkyavideegkittrgleivrrdwseiaketqarvleallkdgdvekavrivkevt
eklskyevppeklviheqiphvavakrlaatvisyivlraipfdefdptkhkydaeyyie
nqvlpaverilrgyrkedlryq

Timeline for d1gcxa4:

• d1gcxa4 first appeared in SCOPe 2.06
  
• d1gcxa4 appears in the current release, SCOPe 2.08