SCOPe 2.08: Domain d1hrdb1: 1hrd B:195-449

Lineage for d1hrdb1 (1hrd B:195-449)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
   extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

6. Protein Glutamate dehydrogenase [51884] (8 species)

7. Species Clostridium symbiosum [TaxId:1512] [51885] (4 PDB entries)

8. Domain d1hrdb1: 1hrd B:195-449 [30220]
   Other proteins in same PDB: d1hrda2, d1hrdb2, d1hrdc2
   has additional insertions and/or extensions that are not grouped together

Details for d1hrdb1

PDB Entry: 1hrd, 1.96 Å

PDB Description: glutamate dehydrogenase

PDB Compounds: (B:) glutamate dehydrogenase

SCOPe Domain Sequences for d1hrdb1:

Sequence; same for both SEQRES and ATOM records:

>d1hrdb1 c.2.1.7 (B:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
karsfggslvrpeatgygsvyyveavmkhendtlvgktvalagfgnvawgaakklaelga
kavtlsgpdgyiydpegitteekinymlemrasgrnkvqdyadkfgvqffpgekpwgqkv
diimpcatqndvdleqakkivannvkyyievanmpttnealrflmqqpnmvvapskavna
ggvlvsgfemsqnserlswtaeevdsklhqvmtdihdgsaaaaeryglgynlvaganivg
fqkiadammaqgiaw

Timeline for d1hrdb1:

• d1hrdb1 first appeared (with stable ids) in SCOP 1.55
  
• d1hrdb1 appears in SCOPe 2.07