SCOPe 2.08: Domain d1qu4b2: 1qu4 B:44-283

Lineage for d1qu4b2 (1qu4 B:44-283)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Eukaryotic ornithine decarboxylase [51423] (3 species)

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
   Uniprot P07805

8. Domain d1qu4b2: 1qu4 B:44-283 [28660]
   Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
   complexed with plp

Details for d1qu4b2

PDB Entry: 1qu4, 2.9 Å

PDB Description: crystal structure of trypanosoma brucei ornithine decarboxylase

PDB Compounds: (B:) ornithine decarboxylase

SCOPe Domain Sequences for d1qu4b2:

Sequence, based on SEQRES records:

>d1qu4b2 c.1.6.1 (B:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristddslar
crlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgt
elgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Sequence, based on observed residues (ATOM records):

>d1qu4b2 c.1.6.1 (B:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristlsvkfg
akvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhi
ldigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Timeline for d1qu4b2:

• d1qu4b2 first appeared (with stable ids) in SCOP 1.55
  
• d1qu4b2 appears in SCOPe 2.07