SCOPe 2.07: Domain d5dk8b1: 5dk8 B:2-74

Lineage for d5dk8b1 (5dk8 B:2-74)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (9 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54239] (296 PDB entries)
   Uniprot P62988
   identical sequence in many other species

8. Domain d5dk8b1: 5dk8 B:2-74 [280315]
   Other proteins in same PDB: d5dk8a2, d5dk8b2
   automated match to d2murb_
   complexed with mg

Details for d5dk8b1

PDB Entry: 5dk8, 1.32 Å

PDB Description: human ubiquitin in the p1 space group

PDB Compounds: (B:) Polyubiquitin-B

SCOPe Domain Sequences for d5dk8b1:

Sequence; same for both SEQRES and ATOM records:

>d5dk8b1 d.15.1.1 (B:2-74) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
qifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyni
qkestlhlvlrlr

Timeline for d5dk8b1:

• d5dk8b1 first appeared in SCOPe 2.05, called d5dk8b_
  
• d5dk8b1 appears in SCOPe 2.06