SCOPe 2.05: Domain d5cyna_: 5cyn A:

Lineage for d5cyna_ (5cyn A:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.1: The origin DNA-binding domain of SV40 T-antigen [55465] (2 proteins)

6. Protein The origin DNA-binding domain of SV40 T-antigen [55466] (2 species)

7. Species Jc polyomavirus [TaxId:10632] [237285] (4 PDB entries)

8. Domain d5cyna_: 5cyn A: [279890]
   automated match to d4lmdb_
   complexed with edo; mutant

Details for d5cyna_

PDB Entry: 5cyn, 2.7 Å

PDB Description: jc virus large t-antigen origin binding domain f258l mutant

PDB Compounds: (A:) large t antigen

SCOPe Domain Sequences for d5cyna_:

Sequence; same for both SEQRES and ATOM records:

>d5cyna_ d.89.1.1 (A:) The origin DNA-binding domain of SV40 T-antigen {Jc polyomavirus [TaxId: 10632]}
vedpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhgfgg
hnilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesiqgg
lkehdln

Timeline for d5cyna_:

• d5cyna_ is new in SCOPe 2.05-stable
  
• d5cyna_ appears in SCOPe 2.06
  
• d5cyna_ appears in the current release, SCOPe 2.08