SCOPe 2.05: Domain d5e8ka_: 5e8k A:

Lineage for d5e8ka_ (5e8k A:)

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (30 species)
   not a true protein

7. Species Arabidopsis thaliana [TaxId:3702] [279296] (3 PDB entries)

8. Domain d5e8ka_: 5e8k A: [279298]
   automated match to d3kraa_

Details for d5e8ka_

PDB Entry: 5e8k, 3.03 Å

PDB Description: crystal structure of polyprenyl pyrophosphate synthase 2 from arabidopsis thaliana

PDB Compounds: (A:) Geranylgeranyl pyrophosphate synthase 10, mitochondrial

SCOPe Domain Sequences for d5e8ka_:

Sequence, based on SEQRES records:

>d5e8ka_ a.128.1.0 (A:) automated matches {Arabidopsis thaliana [TaxId: 3702]}
ydfkfmsymvnkaksvnkaleeavplrepelkireamrytllsdgkrvrpmlclaacelv
ggqestamsaacaiemlhasslilddlpcmdndslrrgkptnhivfgesiailasqalia
lavqkttsstfadvpperilktvqemvkaveglvagqqadlagegmrfdsdtglehlefi
hihktaalleaaavmgaimgggsdeeierlrsyarciglmfqvvddvldvtksseelgkt
agkdliagkltyprlmgvekskeyaerlniearehllgfdidkvaplvsladyivnr

Sequence, based on observed residues (ATOM records):

>d5e8ka_ a.128.1.0 (A:) automated matches {Arabidopsis thaliana [TaxId: 3702]}
ydfkfmsymvnkaksvnkaleeavplrepelkireamrytllsdgkrvrpmlclaacelv
ggqestamsaacaiemlhasslilddlpcmdndslrrgkptnhivfgesiailasqalia
lavqkttsstfadvpperilktvqemvkaveglvagqqadlagtglehlefihihktaal
leaaavmgaimgggsdeeierlrsyarciglmfqvvddvldkltyprlmgvekskeyaer
lniearehllgfdidkvaplvsladyivnr

Timeline for d5e8ka_:

• d5e8ka_ is new in SCOPe 2.05-stable
  
• d5e8ka_ appears in SCOPe 2.06
  
• d5e8ka_ appears in the current release, SCOPe 2.08