Lineage for d5cpyd_ (5cpy D:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2411049Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2411050Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2411054Protein Polyomavirus coat proteins [49657] (2 species)
  7. 2411055Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
  8. 2411094Domain d5cpyd_: 5cpy D: [278567]
    automated match to d1vpsa_
    complexed with gal, gol, nga, sia

Details for d5cpyd_

PDB Entry: 5cpy (more details), 1.93 Å

PDB Description: crystal structure of murine polyomavirus pta strain vp1 in complex with the gd1a glycan
PDB Compounds: (D:) vp1

SCOPe Domain Sequences for d5cpyd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5cpyd_ b.121.6.1 (D:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}

SCOPe Domain Coordinates for d5cpyd_:

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Timeline for d5cpyd_: