SCOPe 2.05: Domain d4yhda_: 4yhd A:

Lineage for d4yhda_ (4yhd A:)

1. Root: SCOPe 2.05

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.6: Leukocidin-like [56958] (1 superfamily)
   subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel

4. Superfamily f.6.1: Leukocidin-like [56959] (3 families)

5. Family f.6.1.1: Leukocidin (pore-forming toxin) [56960] (5 proteins)
   heptameric fold contains barrel (n=14, S=14) formed by beta-ribbon arms, one from each subunit
   automatically mapped to Pfam PF07968

6. Protein automated matches [190904] (4 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:1280] [278465] (1 PDB entry)

8. Domain d4yhda_: 4yhd A: [278466]
   automated match to d3anza_
   complexed with cl; mutant

Details for d4yhda_

PDB Entry: 4yhd, 2.8 Å

PDB Description: staphylococcal alpha-hemolysin h35a mutant monomer

PDB Compounds: (A:) alpha-hemolysin

SCOPe Domain Sequences for d4yhda_:

Sequence, based on SEQRES records:

>d4yhda_ f.6.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}
iniktgttdigsnttvktgdlvtydkengmakkvfysfiddknhnkkllvirtkgtiagq
yrvyseeganksglawpsafkvqlqlpdnevaqisdyyprnsidtkeymstltygfngnv
tgddtgkiggliganvsightlkyvqpdfktilesptdkkvgwkvifnnmvnqnwgpydr
dswnpvygnqlfmktrngsmkaaenfldpnkassllssgfspdfatvitmdrkaskqqtn
idviyervrddyqlhwtstnwkgtntkdkwtdrsserykidwekeemtnl

Sequence, based on observed residues (ATOM records):

>d4yhda_ f.6.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}
iniktgttdigsnttvktgdlvtydkengmakkvfysfiddknhnkkllvirtkgtiagq
yrvyseeganksglawpsafkvqlqlpdnevaqisdyyprnsidtkeymstltygfngnv
tgddanvsightlkyvqpdfktilesptdkkvgwkvifnnmvnqnwgpydrdswnpvygn
qlfmktrngsmkaaenfldpnkassllssgfspdfatvitmdrkaskqqtnidviyervr
ddyqlhwtstnwkgtntkdkwtdrsserykidwekeemtnl

Timeline for d4yhda_:

• d4yhda_ is new in SCOPe 2.05-stable
  
• d4yhda_ is called d4yhda1 in SCOPe 2.06
  
• d4yhda_ appears in the current release, SCOPe 2.08, called d4yhda1