Lineage for d5a86b_ (5a86 B:)

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2728284Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2728285Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2728286Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)
  6. 2729635Protein automated matches [190059] (14 species)
    not a true protein
  7. 2729657Species Human (Homo sapiens) [TaxId:9606] [187214] (171 PDB entries)
  8. 2729850Domain d5a86b_: 5a86 B: [278280]
    automated match to d1m13a_
    complexed with d7e

Details for d5a86b_

PDB Entry: 5a86 (more details), 2.25 Å

PDB Description: structure of pregnane x receptor in complex with a sphingosine 1- phosphate receptor 1 antagonist
PDB Compounds: (B:) Nuclear receptor subfamily 1 group I member 2

SCOPe Domain Sequences for d5a86b_:

Sequence, based on SEQRES records: (download)

>d5a86b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qglteeqrmmirelmdaqmktfdttfshfknfrlpgvlssgcelpeslqapsreeaakws
qvrkdlcslkvslqlrgedgsvwnykppadsggkeifsllphmadmstymfkgiisfakv
isyfrdlpiedqisllkgaafelcqlrfntvfnaetgtwecgrlsycledtaggfqqlll
epmlkfhymlkklqlheeeyvlmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecn
rpqpahrflflkimamltelrsinaqhtqrllriqdihpfatplmqelfgi

Sequence, based on observed residues (ATOM records): (download)

>d5a86b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qglteeqrmmirelmdaqmktfdttfshfknfrlpgvsreeaakwsqvrkdlcslkvslq
lrgedgsvwnykppadsggkeifsllphmadmstymfkgiisfakvisyfrdlpiedqis
llkgaafelcqlrfntvfnaetgtwecgrlsycledgfqqlllepmlkfhymlkklqlhe
eeyvlmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnrpqpahrflflkimaml
telrsinaqhtqrllriqdihpfatplmqelfgi

SCOPe Domain Coordinates for d5a86b_:

Click to download the PDB-style file with coordinates for d5a86b_.
(The format of our PDB-style files is described here.)

Timeline for d5a86b_: