SCOPe 2.05: Domain d4zdwa_: 4zdw A:

Lineage for d4zdwa_ (4zdw A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (79 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein automated matches [190047] (27 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189771] (4 PDB entries)

8. Domain d4zdwa_: 4zdw A: [278253]
   Other proteins in same PDB: d4zdwb_, d4zdwc_
   automated match to d2eqba_
   complexed with gdp; mutant

Details for d4zdwa_

PDB Entry: 4zdw, 2.9 Å

PDB Description: crystal structure of the rab gtpase sec4p mutant - s29v in complex with sec2p and gdp

PDB Compounds: (A:) Ras-related protein SEC4

SCOPe Domain Sequences for d4zdwa_:

Sequence, based on SEQRES records:

>d4zdwa_ c.37.1.8 (A:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
simkilligdvgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqlwdtag
qerfrtittayyrgamgiilvydvtdertftnikqwfktvnehandeaqlllvgnksdme
trvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn

Sequence, based on observed residues (ATOM records):

>d4zdwa_ c.37.1.8 (A:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
simkilligdvgvgkscllvrfvedkfnpsfittigidfkiktvdinvklqlwdtagqer
frtittayyrgamgiilvydvtdertftnikqwfktvnehandeaqlllvgnksdmetrv
vtadqgealakelgipfiessaknddnvneifftlakliqekidsn

Timeline for d4zdwa_:

• d4zdwa_ is new in SCOPe 2.05-stable
  
• d4zdwa_ appears in SCOPe 2.06
  
• d4zdwa_ appears in the current release, SCOPe 2.08