SCOPe 2.05: Domain d4zo0c_: 4zo0 C:

Lineage for d4zo0c_ (4zo0 C:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.3: Replication protein Rep, nuclease domain [75492] (2 proteins)
   automatically mapped to Pfam PF08724

6. Protein automated matches [277252] (2 species)
   not a true protein

7. Species Adeno-associated virus 2 (isolate srivastava/1982) [TaxId:648242] [277998] (1 PDB entry)

8. Domain d4zo0c_: 4zo0 C: [278001]
   automated match to d1uuta_
   complexed with ipa, mg

Details for d4zo0c_

PDB Entry: 4zo0, 2.3 Å

PDB Description: x-ray structure of aav-2 origin binding domain

PDB Compounds: (C:) Protein Rep68

SCOPe Domain Sequences for d4zo0c_:

Sequence, based on SEQRES records:

>d4zo0c_ d.89.1.3 (C:) automated matches {Adeno-associated virus 2 (isolate srivastava/1982) [TaxId: 648242]}
hmpgfyeivikvpsdldehlpgisdsfvnwvaekewelppdsdmdlnlieqapltvaekl
qrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksmvlgrflsqirekliqr
iyrgieptlpnwfavtktrngagggnkvvdesyipnyllpktqpelqwawtnmeqylsac
lnlterkrlvaq

Sequence, based on observed residues (ATOM records):

>d4zo0c_ d.89.1.3 (C:) automated matches {Adeno-associated virus 2 (isolate srivastava/1982) [TaxId: 648242]}
hmpgfyeivikvpsdldehlpgisdsfvnwvaekewelppdsdmdlnlieqapltvaekl
qrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksmvlgrflsqirekliqr
iyrgieptlpnwfavtktrnagggnkvvdesyipnyllpktqpelqwawtnmeqylsacl
nlterkrlvaq

Timeline for d4zo0c_:

• d4zo0c_ is new in SCOPe 2.05-stable
  
• d4zo0c_ is called d4zo0c1 in SCOPe 2.06
  
• d4zo0c_ appears in the current release, SCOPe 2.08, called d4zo0c1