SCOPe 2.08: Domain d4wdyc_: 4wdy C:

Lineage for d4wdyc_ (4wdy C:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (13 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [270722] (7 PDB entries)

8. Domain d4wdyc_: 4wdy C: [270726]
   automated match to d4mbzj_
   complexed with edo, gol; mutant

Details for d4wdyc_

PDB Entry: 4wdy, 1.9 Å

PDB Description: jc polyomavirus vp1 five-fold pore mutant n221q

PDB Compounds: (C:) Major capsid protein VP1

SCOPe Domain Sequences for d4wdyc_:

Sequence, based on SEQRES records:

>d4wdyc_ b.121.6.1 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhff
svggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdp
trnentryfgtltggeqvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftn
rsgsqqwrglsryfkvqlrkrrvkn

Sequence, based on observed residues (ATOM records):

>d4wdyc_ b.121.6.1 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggeqvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvkn

Timeline for d4wdyc_:

• d4wdyc_ first appeared in SCOPe 2.05
  
• d4wdyc_ appears in SCOPe 2.07