SCOPe 2.05: Domain d4rg8a_: 4rg8 A:

Lineage for d4rg8a_ (4rg8 A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.0: automated matches [191357] (1 protein)
   not a true family

6. Protein automated matches [190396] (30 species)
   not a true protein

7. Species Methylocaldum szegediense [TaxId:73780] [269348] (1 PDB entry)

8. Domain d4rg8a_: 4rg8 A: [269349]
   automated match to d3hp9a_
   complexed with mg

Details for d4rg8a_

PDB Entry: 4rg8, 2.12 Å

PDB Description: structural and biochemical studies of a moderately thermophilic exonuclease i from methylocaldum szegediense

PDB Compounds: (A:) exonuclease I

SCOPe Domain Sequences for d4rg8a_:

Sequence, based on SEQRES records:

>d4rg8a_ c.55.3.0 (A:) automated matches {Methylocaldum szegediense [TaxId: 73780]}
ccslywydyetfgtdprrdrpaqfagirtdlelnpigepvtlfckpardvlpvpeaclit
gitpqmaaerglkeaefitriheqfsvpgtcvagynnirfddevtrhclyrnlfdpyere
wrngnsrwdiidmlrltralrpegiewpvdgsgkpslrlealtvangiqhenahdaladv
ratiavarlvrerqpklfnfvfanrgkreafellrfgamqpvlhvsekyasdryclavvv
alarhprnpngvvvydlsvdptplidlnaedlrerlftpasklppgverialktvhlnkc
pviapltalrsqdterlqidldrcnrhldrlkrewtlpkkireamtyngpetdtddpdlm
lydgflgdadravlkwlrgltpdelaraqpsfedarlpellfryrarnfpetltpeetar
weayrirrltvegcggsivlneylariealeaspdlsakdreilknlreyareiis

Sequence, based on observed residues (ATOM records):

>d4rg8a_ c.55.3.0 (A:) automated matches {Methylocaldum szegediense [TaxId: 73780]}
ccslywydyetfgtdprrdrpaqfagirtdlelnpigepvtlfckpardvlpvpeaclit
gitpqmaaerglkeaefitriheqfsvpgtcvagynnirfddevtrhclyrnlfdpyere
wrngnsrwdiidmlrltralrpegiewpvdgsgkpslrlealtvangiqhahdaladvra
tiavarlvrerqpklfnfvfanrgkreafellrfgamqpvlhvsekyasdryclavvval
arhprnpngvvvydlsvdptplidlnaedlrerlftpasklppgverialktvhlnkcpv
iapltalrsqdterlqidldrcnrhldrlkrewtlpkkireamttddpdlmlydgflgda
dravlkwlrgltpdelaraqpsfedarlpellfryrarnfpetltpeetarweayrirrl
tvegcggsivlneylariealeaspdlsakdreilknlreyareiis

Timeline for d4rg8a_:

• d4rg8a_ is new in SCOPe 2.05-stable
  
• d4rg8a_ appears in SCOPe 2.06
  
• d4rg8a_ appears in the current release, SCOPe 2.08