Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2575216Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2575768Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
    not a true fold, gathers together transmembrane barrels of different (n,S)
  4. 2575889Superfamily f.4.3: Porins [56935] (5 families) (S)
  5. 2576115Family f.4.3.0: automated matches [267625] (1 protein)
    not a true family
  6. 2576116Protein automated matches [267676] (10 species)
    not a true protein

Species:

  1. 2576117Acinetobacter baumannii [TaxId:470] [317226] (4 PDB entries)
    1. Domain for 5fp1:
    2. Domains for 5fr8:
      1. 2576119Domain d5fr8a_: 5fr8 A: [317229]
        automated match to d1fepa_
        complexed with c8e
      2. 2576120Domain d5fr8b_: 5fr8 B: [317227]
        automated match to d1fepa_
        complexed with c8e
    3. Domains for 6h7f:
      1. 3058455Domain d6h7fc_: 6h7f C: [358517]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
      2. 3058545Domain d6h7fb_: 6h7f B: [358607]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
      3. 3058579Domain d6h7fa_: 6h7f A: [358641]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
    4. Domains for 6hcp:
      1. 3058462Domain d6hcpa_: 6hcp A: [358524]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
      2. 3058476Domain d6hcpc_: 6hcp C: [358538]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
      3. 3058546Domain d6hcpb_: 6hcp B: [358608]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
  2. 2576121Bordetella pertussis [TaxId:520] [267830] (1 PDB entry)
  3. 2576123Providencia stuartii [TaxId:588] [311523] (4 PDB entries)
    1. Domains for 4d65:
      1. 2576124Domain d4d65a_: 4d65 A: [311722]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      2. 2576125Domain d4d65b_: 4d65 B: [311574]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      3. 2576126Domain d4d65c_: 4d65 C: [311534]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      4. 2576127Domain d4d65d_: 4d65 D: [311555]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      5. 2576128Domain d4d65e_: 4d65 E: [311524]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      6. 2576129Domain d4d65f_: 4d65 F: [311645]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
    2. Domains for 5nxn:
      1. 3046940Domain d5nxnb_: 5nxn B: [347002]
        automated match to d4d65a_
        complexed with ca; mutant
      2. 3046945Domain d5nxna_: 5nxn A: [347007]
        automated match to d4d65a_
        complexed with ca; mutant
      3. 3046951Domain d5nxnc_: 5nxn C: [347013]
        automated match to d4d65a_
        complexed with ca; mutant
    3. Domains for 5nxr:
      1. 3046899Domain d5nxrc_: 5nxr C: [346961]
        automated match to d4d65a_
        complexed with ca, cl, lda
      2. 3046905Domain d5nxrb_: 5nxr B: [346967]
        automated match to d4d65a_
        complexed with ca, cl, lda
      3. 3046919Domain d5nxra_: 5nxr A: [346981]
        automated match to d4d65a_
        complexed with ca, cl, lda
    4. Domains for 5nxu:
      1. 3046963Domain d5nxub_: 5nxu B: [347025]
        automated match to d4d65a_
        complexed with ca, lda, mal
      2. 3046978Domain d5nxua_: 5nxu A: [347040]
        automated match to d4d65a_
        complexed with ca, lda, mal
      3. 3047056Domain d5nxuc_: 5nxu C: [347118]
        automated match to d4d65a_
        complexed with ca, lda, mal
  4. 2576130Pseudomonas aeruginosa [TaxId:208964] [317230] (1 PDB entry)
  5. 2576133Pseudomonas aeruginosa [TaxId:287] [311191] (1 PDB entry)
  6. 3046762Pseudomonas aeruginosa [TaxId:798130] [346824] (1 PDB entry)
  7. 3047266Vibrio cholerae [TaxId:666] [347328] (1 PDB entry)
  8. 3051363Vibrio cholerae [TaxId:345073] [351425] (1 PDB entry)
  9. 3053891Klebsiella aerogenes [TaxId:548] [353953] (1 PDB entry)
  10. 3058456Acinetobacter baumannii [TaxId:575584] [358518] (1 PDB entry)

More info for Protein automated matches from f.4.3.0: automated matches

Timeline for Protein automated matches from f.4.3.0: automated matches: