SCOPe 2.08: Domain d4n4qd_: 4n4q D:

Lineage for d4n4qd_ (4n4q D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.0: automated matches [191319] (1 protein)
   not a true family

6. Protein automated matches [190115] (94 species)
   not a true protein

7. Species Mycoplasma synoviae [TaxId:262723] [257122] (2 PDB entries)

8. Domain d4n4qd_: 4n4q D: [266877]
   automated match to d4n4pa_

Details for d4n4qd_

PDB Entry: 4n4q, 2 Å

PDB Description: Crystal Structure of N-acetylneuraminate lyase from Mycoplasma synoviae, crystal form II

PDB Compounds: (D:) Acylneuraminate lyase

SCOPe Domain Sequences for d4n4qd_:

Sequence, based on SEQRES records:

>d4n4qd_ c.1.10.0 (D:) automated matches {Mycoplasma synoviae [TaxId: 262723]}
nfdkfkglfpamvtpftkdgklhkagvkevvnflvekqkvdgiyitgstgeflllsfedk
kevmklvaeanagrvtliaqigslnieetkelaklakelkydaisaitpyyynfsfneth
hyyeeiskaadipmliyylpqlagqkvstdqfgklleiknvigskygatdlfaferlmsk
ypdklfmfawdealamgltmgakgfigstynvnakganaiikaweandkeavmklthtyn
dyvldliskglmqslkaimrlhgvdagytrkpfwryedeeikkhaefitdkylk

Sequence, based on observed residues (ATOM records):

>d4n4qd_ c.1.10.0 (D:) automated matches {Mycoplasma synoviae [TaxId: 262723]}
nfdkfkglfpamvtpftkdgklhkagvkevvnflvekqkvdgiyitgstgeflllsfedk
kevmklvaeanagrvtliaqigslnieetkelaklakelkydaisaitpyyynfsfneth
hyyeeiskaadipmliyylpqlagkvstdqfgklleiknvigskygatdlfaferlmsky
pdklfmfawdealamgltmgakgfigstynvnakganaiikaweandkeavmklthtynd
yvldliskglmqslkaimrlhgvdagytrkpfwryedeeikkhaefitdkylk

Timeline for d4n4qd_:

• d4n4qd_ first appeared in SCOPe 2.05
  
• d4n4qd_ appears in SCOPe 2.07