SCOPe 2.05: Domain d3obta2: 3obt A:1068-1278

Lineage for d3obta2 (3obt A:1068-1278)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.42: beta-Trefoil [50352] (8 superfamilies)
   barrel, closed; n=6, S=12; and a hairpin triplet; meander
   duplication: has internal pseudo threefold symmetry

4. Superfamily b.42.4: STI-like [50386] (3 families)

5. Family b.42.4.0: automated matches [191368] (1 protein)
   not a true family

6. Protein automated matches [190445] (5 species)
   not a true protein

7. Species Clostridium botulinum [TaxId:1491] [225676] (21 PDB entries)

8. Domain d3obta2: 3obt A:1068-1278 [265113]
   Other proteins in same PDB: d3obta1
   automated match to d3ogga2
   complexed with gol, slb

Details for d3obta2

PDB Entry: 3obt, 2 Å

PDB Description: crystal structure of botulinum neurotoxin serotype d ligand binding domain in complex with n-acetylneuraminic acid

PDB Compounds: (A:) Botulinum neurotoxin type D

SCOPe Domain Sequences for d3obta2:

Sequence, based on SEQRES records:

>d3obta2 b.42.4.0 (A:1068-1278) automated matches {Clostridium botulinum [TaxId: 1491]}
snedinivyegqilrnvikdywgnplkfdteyyiindnyidryiapesnvlvlvqypdrs
klytgnpitiksvsdknpysrilngdniilhmlynsrkymiirdtdtiyatqggecsqnc
vyalklqsnlgnygigifsiknivsknkycsqifssfrentmlladiykpwrfsfknayt
pvavtnyetkllstssfwkfisrdpgwvepp

Sequence, based on observed residues (ATOM records):

>d3obta2 b.42.4.0 (A:1068-1278) automated matches {Clostridium botulinum [TaxId: 1491]}
snedinivyegqilrnvikdywgnplkfdteyyiindnyidryiapesnvlvlvqypdrs
klytgnpitiksvsdknpysrilngdniilhmlynsrkymiirdtdtiyaecsqncvyal
klqsnlgnygigifsiknivknkycsqifssfrentmlladiykpwrfsfknaytpvavt
nyetkllstssfwkfisrdpgwvepp

Timeline for d3obta2:

• d3obta2 is new in SCOPe 2.05-stable
  
• d3obta2 appears in SCOPe 2.06
  
• d3obta2 appears in the current release, SCOPe 2.08