SCOPe 2.05: Domain d3gy1b2: 3gy1 B:118-404

Lineage for d3gy1b2 (3gy1 B:118-404)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)

6. Protein Mandelate racemase [51617] (3 species)

7. Species Clostridium beijerinckii [TaxId:290402] [267745] (2 PDB entries)

8. Domain d3gy1b2: 3gy1 B:118-404 [264817]
   Other proteins in same PDB: d3gy1a1, d3gy1b1
   complexed with mg

Details for d3gy1b2

PDB Entry: 3gy1, 1.6 Å

PDB Description: crystal structure of putative mandelate racemase/muconate lactonizing protein from clostridium beijerinckii ncimb 8052

PDB Compounds: (B:) Mandelate racemase/muconate lactonizing protein

SCOPe Domain Sequences for d3gy1b2:

Sequence, based on SEQRES records:

>d3gy1b2 c.1.11.2 (B:118-404) Mandelate racemase {Clostridium beijerinckii [TaxId: 290402]}
ksrdaiaaythavadnledlyteideirkkgyqhircqlgfyggnssefhttdnptqgsy
fdqdeymrttvsmfsslrekygykfhilhdvherlfpnqavqfakdvekykpyfiedilp
pdqnewlgqirsqtstplatgelfnnpmewkslianrqvdfirchvsqiggitpalklgs
lcaafgvriawhtpsditpigvavnihlninlhnaaiqenieindntrcvfsgipeakng
ffypiespgigvdideneiikypveyrphewtqsripdgtivteghh

Sequence, based on observed residues (ATOM records):

>d3gy1b2 c.1.11.2 (B:118-404) Mandelate racemase {Clostridium beijerinckii [TaxId: 290402]}
ksrdaiaaythavadnledlyteideirkkgyqhircqlgfqgsyfdqdeymrttvsmfs
slrekygykfhilhdvherlfpnqavqfakdvekykpyfiedilppdqnewlgqirsqts
tplatgelfnnpmewkslianrqvdfirchvsqiggitpalklgslcaafgvriawhtps
ditpigvavnihlninlhnaaiqenieindntrcvfsgipeakngffypiespgigvdid
eneiikypveyrphewtqsripdgtivteghh

Timeline for d3gy1b2:

• d3gy1b2 is new in SCOPe 2.05-stable
  
• d3gy1b2 appears in SCOPe 2.06
  
• d3gy1b2 appears in the current release, SCOPe 2.08