Lineage for d2ydxd1 (2ydx D:28-334)

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2102557Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2102558Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2106799Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2106800Protein automated matches [190069] (239 species)
    not a true protein
  7. 2107789Species Human (Homo sapiens) [TaxId:9606] [186944] (46 PDB entries)
  8. 2107875Domain d2ydxd1: 2ydx D:28-334 [264615]
    Other proteins in same PDB: d2ydxa2, d2ydxa3, d2ydxb2, d2ydxb3, d2ydxc2, d2ydxc3, d2ydxd2, d2ydxd3, d2ydxe2, d2ydxe3
    automated match to d4ndne_
    complexed with ca, nap, so4, stl, txp

Details for d2ydxd1

PDB Entry: 2ydx (more details), 2.8 Å

PDB Description: crystal structure of human s-adenosylmethionine synthetase 2, beta subunit
PDB Compounds: (D:) methionine adenosyltransferase 2 subunit beta

SCOPe Domain Sequences for d2ydxd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ydxd1 c.2.1.0 (D:28-334) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfqp
hvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnppy
reedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqfs
nksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaiad
afnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidkr
wrqtvfh

SCOPe Domain Coordinates for d2ydxd1:

Click to download the PDB-style file with coordinates for d2ydxd1.
(The format of our PDB-style files is described here.)

Timeline for d2ydxd1: