SCOPe 2.07: Domain d4ocla_: 4ocl A:

Lineage for d4ocla_ (4ocl A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest

4. Superfamily c.97.3: JAB1/MPN domain [102712] (2 families)

5. Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
   Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)

6. Protein Proteasome regulatory subunit Rpn8 [346089] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346339] (9 PDB entries)

8. Domain d4ocla_: 4ocl A: [263271]
   Other proteins in same PDB: d4oclb_, d4oclc_, d4ocle_, d4oclf_
   automated match to d2o95a_
   complexed with zn

Details for d4ocla_

PDB Entry: 4ocl, 2.4 Å

PDB Description: Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia

PDB Compounds: (A:) 26s proteasome regulatory subunit rpn8

SCOPe Domain Sequences for d4ocla_:

Sequence, based on SEQRES records:

>d4ocla_ c.97.3.1 (A:) Proteasome regulatory subunit Rpn8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
hekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfeedeknsd
vwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnplllivd
vkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllr

Sequence, based on observed residues (ATOM records):

>d4ocla_ c.97.3.1 (A:) Proteasome regulatory subunit Rpn8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
hekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfeedeknsd
vwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnplllivd
vkqqgvglptdayvaieqktflhlpctieaeeaeeigvehllr

Timeline for d4ocla_:

• d4ocla_ first appeared in SCOPe 2.05
  
• d4ocla_ appears in SCOPe 2.06