Lineage for d4k4hm3 (4k4h M:386-575)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2239280Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
  4. 2239281Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families) (S)
  5. 2239289Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
    insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
  6. 2239467Protein DNA polymerase lambda [102943] (1 species)
  7. 2239468Species Human (Homo sapiens) [TaxId:9606] [102944] (27 PDB entries)
  8. 2239506Domain d4k4hm3: 4k4h M:386-575 [262808]
    Other proteins in same PDB: d4k4ha1, d4k4ha2, d4k4ha4, d4k4he1, d4k4he2, d4k4he4, d4k4hi1, d4k4hi2, d4k4hi4, d4k4hm1, d4k4hm2, d4k4hm4
    automated match to d2bcqa3
    protein/DNA complex; complexed with 1rz, act, ca

Details for d4k4hm3

PDB Entry: 4k4h (more details), 2.1 Å

PDB Description: ternary crystal structures of a human dna polymerase lambda in complex with dna and (-)3tc-tp.
PDB Compounds: (M:) DNA polymerase lambda

SCOPe Domain Sequences for d4k4hm3:

Sequence, based on SEQRES records: (download)

>d4k4hm3 d.218.1.2 (M:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
rmpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifs
rlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacally
ftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrvlptptekdvfrllgl
pyrepaerdw

Sequence, based on observed residues (ATOM records): (download)

>d4k4hm3 d.218.1.2 (M:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
rmpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifs
rlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacally
ftgsahfnrsmralaktkgmslsehalstavvrckvgpgrvlptptekdvfrllglpyre
paerdw

SCOPe Domain Coordinates for d4k4hm3:

Click to download the PDB-style file with coordinates for d4k4hm3.
(The format of our PDB-style files is described here.)

Timeline for d4k4hm3: