SCOPe 2.06: Domain d4k4gi3: 4k4g I:386-575

Lineage for d4k4gi3 (4k4g I:386-575)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
   core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

4. Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)

5. Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
   insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

6. Protein DNA polymerase lambda [102943] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [102944] (27 PDB entries)

8. Domain d4k4gi3: 4k4g I:386-575 [262796]
   Other proteins in same PDB: d4k4ga1, d4k4ga2, d4k4ga4, d4k4ge1, d4k4ge2, d4k4ge4, d4k4gi1, d4k4gi2, d4k4gi4, d4k4gm1, d4k4gm2, d4k4gm4
   automated match to d2bcqa3
   protein/DNA complex; complexed with 1s0, act, ca, cac

Details for d4k4gi3

PDB Entry: 4k4g, 2.15 Å

PDB Description: ternary crystal structures of human dna polymerase lambda in complex with dna and l-dctp.

PDB Compounds: (I:) DNA polymerase lambda

SCOPe Domain Sequences for d4k4gi3:

Sequence, based on SEQRES records:

>d4k4gi3 d.218.1.2 (I:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
rmpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifs
rlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacally
ftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrvlptptekdvfrllgl
pyrepaerdw

Sequence, based on observed residues (ATOM records):

>d4k4gi3 d.218.1.2 (I:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
rmpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifs
rlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacally
ftgsahfnrsmralaktkgmslsehalstavvckvgpgrvlptptekdvfrllglpyrep
aerdw

Timeline for d4k4gi3:

• d4k4gi3 first appeared in SCOPe 2.05
  
• d4k4gi3 appears in SCOPe 2.07
  
• d4k4gi3 appears in the current release, SCOPe 2.08