Lineage for d4ub8d_ (4ub8 D:)

  1. Root: SCOPe 2.04
  2. 1695624Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)
  3. 1698958Fold f.26: Bacterial photosystem II reaction centre, L and M subunits [81484] (1 superfamily)
    five transmembrane helices forming a sheet-like structure
  4. 1698959Superfamily f.26.1: Bacterial photosystem II reaction centre, L and M subunits [81483] (1 family) (S)
    automatically mapped to Pfam PF00124
  5. 1698960Family f.26.1.1: Bacterial photosystem II reaction centre, L and M subunits [81482] (5 proteins)
    L and M are probably related to each other
  6. 1699137Protein automated matches [190224] (6 species)
    not a true protein
  7. Species Thermosynechococcus vulcanus [TaxId:32053] [189911] (5 PDB entries)
  8. 1699231Domain d4ub8d_: 4ub8 D: [261432]
    Other proteins in same PDB: d4ub8b_, d4ub8c_, d4ub8e_, d4ub8h_, d4ub8i_, d4ub8k_, d4ub8l_, d4ub8m_, d4ub8u_, d4ub8v_, d4ub8z_
    automated match to d3arcd_
    complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl

Details for d4ub8d_

PDB Entry: 4ub8 (more details), 1.95 Å

PDB Description: native structure of photosystem ii (dataset-2) by a femtosecond x-ray laser
PDB Compounds: (D:) Photosystem II D2 protein

SCOPe Domain Sequences for d4ub8d_:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ub8d_ f.26.1.1 (D:) automated matches {Thermosynechococcus vulcanus [TaxId: 32053]}
ergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassyleg
cnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqf
eiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhn
wtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtan
rfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpe
fetfytknlllnegirawmapqdqphenfvfpeevlprgnal

SCOPe Domain Coordinates for d4ub8d_:

Click to download the PDB-style file with coordinates for d4ub8d_.
(The format of our PDB-style files is described here.)

Timeline for d4ub8d_: