Lineage for d4rf0b_ (4rf0 B:)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2501112Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2501389Protein Ubiquitin [54238] (8 species)
  7. 2501491Species Human (Homo sapiens) [TaxId:9606] [54239] (253 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 2501820Domain d4rf0b_: 4rf0 B: [260581]
    Other proteins in same PDB: d4rf0a1, d4rf0a2
    automated match to d1xd3b_
    complexed with 3cn, so4, zn

Details for d4rf0b_

PDB Entry: 4rf0 (more details), 2.8 Å

PDB Description: Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in complex with ubiquitin (space group P6522)
PDB Compounds: (B:) ubiquitin-60s ribosomal protein l40

SCOPe Domain Sequences for d4rf0b_:

Sequence; same for both SEQRES and ATOM records: (download)

>d4rf0b_ d.15.1.1 (B:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4rf0b_:

Click to download the PDB-style file with coordinates for d4rf0b_.
(The format of our PDB-style files is described here.)

Timeline for d4rf0b_: