SCOPe 2.04: Domain d4p1yd_: 4p1y D:

Lineage for d4p1yd_ (4p1y D:)

1. Root: SCOPe 2.04

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.6: Leukocidin-like [56958] (1 superfamily)
   subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel

4. Superfamily f.6.1: Leukocidin-like [56959] (3 families)

5. Family f.6.1.0: automated matches [227293] (1 protein)
   not a true family

6. Protein automated matches [227114] (4 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:158878] [259901] (2 PDB entries)

8. Domain d4p1yd_: 4p1y D: [260349]
   Other proteins in same PDB: d4p1yc_
   automated match to d4iyaa_

Details for d4p1yd_

PDB Entry: 4p1y, 2.99 Å

PDB Description: Crystal structure of staphylococcal gamma-hemolysin prepore

PDB Compounds: (D:) Gamma-hemolysin component A

SCOPe Domain Sequences for d4p1yd_:

Sequence, based on SEQRES records:

>d4p1yd_ f.6.1.0 (D:) automated matches {Staphylococcus aureus [TaxId: 158878]}
digqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkk
ypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsigg
sgsfnysktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgp
aardyfvpdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrl
avdrkhdafknrnvtvkyevnwkthevkiksitpk

Sequence, based on observed residues (ATOM records):

>d4p1yd_ f.6.1.0 (D:) automated matches {Staphylococcus aureus [TaxId: 158878]}
digqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkk
ypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklgynigsgsfnysktis
ynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardyfvpdnq
lppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrkhdafkn
rnvtvkyevnwkthevkiksitpk

Timeline for d4p1yd_:

• d4p1yd_ is new in SCOPe 2.04-stable
  
• d4p1yd_ appears in SCOPe 2.05
  
• d4p1yd_ appears in the current release, SCOPe 2.08, called d4p1yd1