SCOPe 2.04: Domain d4p1ya_: 4p1y A:

Lineage for d4p1ya_ (4p1y A:)

1. Root: SCOPe 2.04

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.6: Leukocidin-like [56958] (1 superfamily)
   subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel

4. Superfamily f.6.1: Leukocidin-like [56959] (3 families)

5. Family f.6.1.1: Leukocidin (pore-forming toxin) [56960] (5 proteins)
   heptameric fold contains barrel (n=14, S=14) formed by beta-ribbon arms, one from each subunit
   automatically mapped to Pfam PF07968

6. Protein automated matches [190904] (3 species)
   not a true protein
7. Species Staphylococcus aureus [TaxId:158878] [189747] (4 PDB entries)

8. Domain d4p1ya_: 4p1y A: [259904]
   Other proteins in same PDB: d4p1yb_
   automated match to d3lkfa_

Details for d4p1ya_

PDB Entry: 4p1y, 2.99 Å

PDB Description: Crystal structure of staphylococcal gamma-hemolysin prepore

PDB Compounds: (A:) Gamma-hemolysin component B

SCOPe Domain Sequences for d4p1ya_:

Sequence, based on SEQRES records:

>d4p1ya_ f.6.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 158878]}
vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfggdisisnglsgglngn
tafsetinykqesyrttlsrntnyknvgwgveahkimnngagpygrdsfhptygnelfla
gaqssayagqnfiaqhqmpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqic
wngfywaganyknfktrtfkstyeidwenhkvklldtketennk

Sequence, based on observed residues (ATOM records):

>d4p1ya_ f.6.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 158878]}
vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfgntafsetinykqesyr
ttlsrntnyknvgwgveahkimnngagpygrdsfhptygnelflagssayagqnfiaqhq
mpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqicwngfywaganyknfktr
tfkstyeidwenhkvklldtketennk

Timeline for d4p1ya_:

• d4p1ya_ is new in SCOPe 2.04-stable
  
• d4p1ya_ appears in SCOPe 2.05
  
• d4p1ya_ appears in the current release, SCOPe 2.08