SCOPe 2.06: Domain d4jkmd1: 4jkm D:18-375

Lineage for d4jkmd1 (4jkm D:18-375)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein D-maltodextrin-binding protein, MBP [53862] (5 species)
   contains a few additional helices in the C-terminal extension; homologous to thiaminase I

7. Species Escherichia coli [TaxId:562] [53863] (65 PDB entries)
   Uniprot P02928

8. Domain d4jkmd1: 4jkm D:18-375 [259655]
   Other proteins in same PDB: d4jkma1, d4jkma2, d4jkma3, d4jkma4, d4jkmb1, d4jkmb2, d4jkmb3, d4jkmb4, d4jkmd2
   automated match to d3pgfa_

Details for d4jkmd1

PDB Entry: 4jkm, 2.26 Å

PDB Description: crystal structure of clostridium perfringens beta-glucuronidase

PDB Compounds: (D:) Maltose-binding periplasmic protein

SCOPe Domain Sequences for d4jkmd1:

Sequence; same for both SEQRES and ATOM records:

>d4jkmd1 c.94.1.1 (D:18-375) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
iwingdkaynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfg
gyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkdllpnppkt
weeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikdvgvdnaga
kagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskvnygvtvlp
tfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksye
eelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdealkdaqt

Timeline for d4jkmd1:

• d4jkmd1 first appeared in SCOPe 2.04, called d4jkmd_
  
• d4jkmd1 was called d4jkmd_ in SCOPe 2.05
  
• d4jkmd1 appears in SCOPe 2.07
  
• d4jkmd1 appears in the current release, SCOPe 2.08