SCOPe 2.04: Domain d4pbta_: 4pbt A:

Lineage for d4pbta_ (4pbt A:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (8 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [193079] (8 PDB entries)

8. Domain d4pbta_: 4pbt A: [258721]
   automated match to d4ndaa_
   complexed with 2lq, gol, p4g

Details for d4pbta_

PDB Entry: 4pbt, 1.9 Å

PDB Description: crystal structure of the m. jannaschii g2 trna synthetase variant bound to 4-trans-cyclooctene-amidopheylalanine (tco-amf)

PDB Compounds: (A:) Tyrosine--tRNA ligase

SCOPe Domain Sequences for d4pbta_:

Sequence; same for both SEQRES and ATOM records:

>d4pbta_ c.26.1.1 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
mdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagf
diiieladlhaylnqkgeldeirkigdynkkvfeamglkakyvygsewmldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsihykgvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrllehh

Timeline for d4pbta_:

• d4pbta_ is new in SCOPe 2.04-stable
  
• d4pbta_ appears in SCOPe 2.05
  
• d4pbta_ appears in the current release, SCOPe 2.08, called d4pbta1