SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2013114Fold a.143: RPB6/omega subunit-like [63561] (1 superfamily)
    core: 2 helices and adjacent loops
  4. 2013115Superfamily a.143.1: RPB6/omega subunit-like [63562] (2 families) (S)
    the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
  5. 2013116Family a.143.1.1: RNA polymerase omega subunit [63563] (2 protein domains)
    4 helices; irregular array
  6. 2013156Protein automated matches [257263] (2 species)
    not a true protein

Species:

  1. 2013157Thermus thermophilus [TaxId:300852] [257264] (3 PDB entries)
    1. Domain for 4oio:
    2. Domain for 4q4z:
    3. Domain for 4q5s:
  2. 2283211Thermus thermophilus [TaxId:274] [326512] (1 PDB entry)

More info for Protein automated matches from a.143.1.1: RNA polymerase omega subunit

Timeline for Protein automated matches from a.143.1.1: RNA polymerase omega subunit: